STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1329Cellulose-binding family II; KEGG: sro:Sros_5719 hypothetical protein; PFAM: cellulose-binding family II; lipolytic protein G-D-S-L family; SMART: cellulose-binding family II. (369 aa)    
Predicted Functional Partners:
Celf_3156
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Ricin B lectin; KEGG: endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10; Ricin B lectin.
     0.843
Celf_1340
KEGG: pectate lyase; PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin.
 
 
 0.797
Celf_0398
KEGG: pectate lyase; PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin.
 
 
 0.794
Celf_3155
Alpha-N-arabinofuranosidase; PFAM: Ricin B lectin; KEGG: scb:SCAB_79241 putative arabinofuranosidase; SMART: Ricin B lectin.
 
   
 0.771
Celf_0019
KEGG: glycoside hydrolase family 9; PFAM: glycoside hydrolase family 9; cellulose-binding family II; Fibronectin type III domain protein; type 3a cellulose-binding domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein.
  
0.751
Celf_3157
KEGG: glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; Ricin B lectin; SMART: Ricin B lectin.
   
 0.740
Celf_3775
Pectate lyase/Amb allergen; KEGG: sco:SCO2821 secreted pectate lyase; PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen.
 
  
 0.735
Celf_1481
PFAM: glycoside hydrolase family 9; KEGG: glycoside hydrolase family 9.
   0.712
cenC
Glycoside hydrolase family 9; The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the disaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
   0.712
Celf_1705
PFAM: glycoside hydrolase family 9; Carbohydrate-binding CenC domain protein; KEGG: glycoside hydrolase family 9.
   0.693
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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