STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_1472KEGG: ach:Achl_0639 transcriptional regulator, MerR family; PFAM: TipAS antibiotic-recognition domain-containing protein; regulatory protein MerR; SMART: regulatory protein MerR. (251 aa)    
Predicted Functional Partners:
Celf_1473
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: haloacid dehalogenase domain protein hydrolase.
       0.590
Celf_0419
Regulatory protein MerR; KEGG: transcriptional regulator, MerR family; PFAM: regulatory protein MerR; DNA polymerase III beta chain; SMART: regulatory protein MerR.
  
     0.557
Celf_0148
PFAM: Protein of unknown function DUF2174-like; KEGG: protein of unknown function DUF2174-like protein.
 
     0.519
Celf_1469
KEGG: bcv:Bcav_4158 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver.
       0.497
Celf_1470
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bcv:Bcav_4157 histidine kinase.
       0.497
Celf_1471
KEGG: bcv:Bcav_4156 hypothetical protein.
       0.497
Celf_1475
KEGG: putative NadR-like transcriptional regulator.
  
    0.425
Celf_1474
KEGG: nicotinamide mononucleotide transporter PnuC; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC.
       0.424
Celf_1476
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: ATPase associated with various cellular activities AAA_3.
       0.424
Celf_1477
KEGG: hypothetical protein.
       0.424
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.