STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3061KEGG: L-lysine 6-monooxygenase (NADPH). (447 aa)    
Predicted Functional Partners:
Celf_3063
PFAM: IucA/IucC family protein; KEGG: IucA/IucC family protein.
  
 0.991
Celf_3062
KEGG: xce:Xcel_1801 IucA/IucC family protein.
  
 0.989
Celf_3065
KEGG: xce:Xcel_1799 hypothetical protein.
 
  
 0.963
Celf_3060
PFAM: Pyridoxal-dependent decarboxylase; KEGG: pyridoxal-dependent decarboxylase.
  
 0.961
Celf_3064
PFAM: peptidase S45 penicillin amidase; KEGG: peptidase S45 penicillin amidase.
 
  
 0.899
Celf_3200
KEGG: acetyltransferase, GNAT family.
  
  
 0.522
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.485
Celf_0010
KEGG: GCN5-related N-acetyltransferase.
  
  
 0.467
Celf_0622
PFAM: GCN5-related N-acetyltransferase; KEGG: kra:Krad_0220 GCN5-related N-acetyltransferase.
  
  
 0.467
Celf_2156
PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: GCN5-related N-acetyltransferase.
  
  
 0.467
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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