STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3080PFAM: glycosyl transferase family 39; KEGG: glycosyl transferase family 39. (602 aa)    
Predicted Functional Partners:
Celf_0005
PFAM: protein of unknown function DUF721; KEGG: protein of unknown function DUF721.
  
     0.747
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.710
Celf_1622
PFAM: protein of unknown function YGGT; KEGG: protein of unknown function YGGT.
  
     0.633
Celf_2270
KEGG: hypothetical protein.
  
     0.580
Celf_1354
KEGG: hypothetical protein.
  
     0.566
Celf_1947
PFAM: glycosyl transferase family 2; KEGG: nml:Namu_2932 dolichyl-phosphate beta-D-mannosyltransferase.
  
 
 
 0.518
Celf_0915
KEGG: ResB family protein.
  
     0.516
pyrF
TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
      
 0.516
Celf_2220
KEGG: hypothetical protein.
  
     0.512
rbpA-2
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.510
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.