STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3768PFAM: protein of unknown function DUF124; KEGG: rer:RER_48260 hypothetical protein. (213 aa)    
Predicted Functional Partners:
Celf_3769
PFAM: protein of unknown function DUF124; KEGG: rer:RER_48250 hypothetical protein.
 
     0.958
Celf_3767
PFAM: protein of unknown function DUF124; KEGG: rer:RER_48270 hypothetical protein.
 
    
0.840
Celf_0213
KEGG: citrate lyase beta subunit.
 
     0.688
Celf_0215
KEGG: sco:SCO2361 hypothetical protein.
 
     0.634
Celf_0214
PFAM: phosphoribosyltransferase; KEGG: sco:SCO2362 hypothetical protein.
 
     0.558
Celf_0417
PFAM: stress protein; KEGG: rha:RHA1_ro02441 tellurium resistance protein.
     0.509
Celf_1824
PFAM: stress protein; KEGG: kra:Krad_0263 stress protein.
     0.466
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.