STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADB48363.1PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: csc:Csac_2739 mandelate racemase/muconate lactonizing protein. (387 aa)    
Predicted Functional Partners:
ADB48361.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: csa:Csal_1073 tripartite ATP-independent periplasmic transporter DctQ.
 
    0.803
ADB48362.1
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pat:Patl_0772 TRAP dicarboxylate transporter, DctM subunit.
 
     0.795
ADB48360.1
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: csa:Csal_2976 TRAP dicarboxylate transporter, DctP subunit.
 
     0.621
ADB48359.1
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: amt:Amet_0553 GntR family transcriptional regulator.
 
     0.497
ADB46491.1
KEGG: bsu:BSU02510 D-galactarate dehydratase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein.
 
  
 0.450
ADB48102.1
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: chy:CHY_1290 UxaA family hydrolase.
 
  
 0.428
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.