STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapFCOG0253 Diaminopimelate epimerase. (274 aa)    
Predicted Functional Partners:
EEV24237.1
Dinucleoside polyphosphate hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
 
 
 
 0.855
EEV24492.1
COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase.
 
 
 0.804
lysA
Diaminopimelate decarboxylase.
 
 0.799
thrA
Bifunctional aspartokinase/homoserine dehydrogenase.
  
 
 0.783
dapE
Succinyl-diaminopimelate desuccinylase.
 
  
 0.754
AM202_0688
Probable aminotransferase.
  
 0.747
murE
UDP-N-acetylmuramyl-tripeptide synthetase.
 
  
 0.722
EEV24720.1
COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
    
 0.669
EEV25292.1
COG0078 Ornithine carbamoyltransferase.
    
 0.669
murF
UDP-MurNAc-pentapeptide synthetase.
    
 0.667
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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