STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrmJRibosomal RNA large subunit methyltransferase J. (208 aa)    
Predicted Functional Partners:
rsmB
Trk system potassium uptake protein TrkA.
  
 0.977
rpmD
50S ribosomal protein L30.
   
  0.977
rplJ
50S ribosomal protein L10.
   
 0.961
rplW
50S ribosomal protein L23.
   
  0.959
rplV
50S ribosomal protein L22.
   
  0.951
rpmC
50S ribosomal protein L29.
    
  0.942
EEV25268.1
COG0024 Methionine aminopeptidase.
  
  0.906
rhlB
ATP-dependent RNA helicase RhlB.
   
 0.896
srmB
ATP-dependent RNA helicase.
   
 0.896
EEV24424.1
Cold-shock DEAD box protein A-like protein; COG0513 Superfamily II DNA and RNA helicases.
   
 0.896
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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