STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srmBATP-dependent RNA helicase. (443 aa)    
Predicted Functional Partners:
rsmB
Trk system potassium uptake protein TrkA.
 
 0.922
rplD
50S ribosomal protein L4.
   
 0.920
EEV24198.1
COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
 
 0.920
rplJ
50S ribosomal protein L10.
   
 0.910
rpsC
30S ribosomal protein S3.
   
 0.897
rrmJ
Ribosomal RNA large subunit methyltransferase J.
   
 0.896
hrpA
ATP-dependent RNA helicase HrpA.
   
 0.895
rpmD
50S ribosomal protein L30.
   
 0.891
rplW
50S ribosomal protein L23.
   
 0.889
EEV25305.1
COG0480 Translation elongation factors (GTPases).
   
 0.887
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.