STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
greACOG0782 Transcription elongation factor. (158 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase subunit beta'.
  
 
 0.916
rpoA
DNA-directed RNA polymerase subunit alpha.
  
 
 0.915
rpoB
DNA-directed RNA polymerase subunit beta.
  
 
 0.887
rpoZ
COG1758 DNA-directed RNA polymerase, subunit K/omega.
   
 
 0.864
EEV24619.1
COG1734 DnaK suppressor protein.
  
 
 
 0.611
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase).
  
 
  0.598
pyrG
COG0504 CTP synthase (UTP-ammonia lyase).
 
  
  0.585
rpoH
RNA polymerase sigma-32 factor.
 
   
 0.571
EEV25199.1
COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4).
       0.559
pyrH
Uridylate kinase.
     
 0.556
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.