STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atpCFOF1 ATP synthase subunit epsilon. (139 aa)    
Predicted Functional Partners:
atpF
FOF1 ATP synthase subunit B.
 
 0.999
atpH
FOF1 ATP synthase subunit delta.
 
 0.999
atpA-2
FOF1 ATP synthase subunit alpha.
 
 0.999
atpG
FOF1 ATP synthase subunit gamma.
 
 0.999
atpD
FOF1 ATP synthase subunit beta.
 
 0.999
atpA
FOF1 ATP synthase subunit A.
 
 0.998
atpE
FOF1 ATP synthase subunit C.
  
 0.998
atpI
FOF1 ATP synthase subunit I.
    
 0.852
rhlB
ATP-dependent RNA helicase RhlB.
    
  0.826
srmB
ATP-dependent RNA helicase.
    
  0.826
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.