STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rphRibonuclease PH. (238 aa)    
Predicted Functional Partners:
vacB
Ribonuclease R.
   
 0.995
rnd
Ribonuclease D.
   
 0.991
EEV25346.1
COG0127 Xanthosine triphosphate pyrophosphatase.
 
 
  0.964
dnaG
DNA primase.
    
 0.961
rpsA
COG0539 Ribosomal protein S1.
   
  0.917
rpsD
30S ribosomal protein S4.
  
  0.881
hrpA
ATP-dependent RNA helicase HrpA.
   
 0.859
rpsK
30S ribosomal protein S11.
  
  0.850
EEV24422.1
COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase).
   
 
 0.825
rpsE
30S ribosomal protein S5.
   
 
  0.817
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.