STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yibKPutative tRNA/rRNA methyltransferase. (159 aa)    
Predicted Functional Partners:
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase.
     
 0.812
AM202_0586
Hypothetical protein.
       0.693
EEV24849.1
rRNA large subunit methyltransferase.
  
   
 0.502
lpd
Glutathione reductase.
       0.491
AM202_0583
Hypothetical protein.
       0.484
apbE
Thiamine biosynthesis lipoprotein ApbE precursor.
       0.467
mnmC
5-methylaminomethyl-2-thiouridine methyltransferase.
     
 0.450
trmB
tRNA (guanine-N(7)-)-methyltransferase; COG0220 Predicted S-adenosylmethionine-dependent methyltransferase.
 
  
 0.437
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.