STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimM16S rRNA-processing protein rimM. (175 aa)    
Predicted Functional Partners:
trmD
tRNA (guanine-N(1)-)-methyltransferase.
 
  
 0.961
rpsP
30S ribosomal protein S16.
  
  
 0.960
rplS
50S ribosomal protein L19.
 
  
 0.954
rpsS
30S ribosomal protein S19.
   
   0.949
rpsF
COG0360 Ribosomal protein S6.
  
  
 0.929
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein.
  
  
 0.892
rpsB
30S ribosomal protein S2.
  
  
 0.878
rpoA
DNA-directed RNA polymerase subunit alpha.
  
  
 0.871
rpsR
COG0238 Ribosomal protein S18.
   
  
 0.862
rpsD
30S ribosomal protein S4.
  
    0.859
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.