STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfla_1120KEGG: sgr:SGR_6429 putative neuramidase. (482 aa)    
Predicted Functional Partners:
Sfla_0076
KEGG: sma:SAV_1082 alpha-galactosidase; PFAM: glycoside hydrolase clan GH-D.
     
  0.900
Sfla_0075
Beta-galactosidase; KEGG: mau:Micau_1715 beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein.
  
 0.725
Sfla_0177
PFAM: glycoside hydrolase family 35; KEGG: sco:SCO6347 beta-galactosidase.
  
 0.725
Sfla_0769
Beta-galactosidase; KEGG: sma:SAV_2573 beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein.
  
 0.725
Sfla_4952
Beta-galactosidase; KEGG: sma:SAV_1325 beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein.
  
 0.725
Sfla_5911
Beta-galactosidase; KEGG: sma:SAV_1027 beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein.
  
 0.725
Sfla_1113
PFAM: dihydrodipicolinate synthetase; KEGG: sgr:SGR_6422 putative dihydrodipicolinate synthase; Belongs to the DapA family.
   
 0.711
Sfla_2755
Helicase domain protein; KEGG: sgr:SGR_3186 putative ATP-dependent DNA helicase; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein.
   
    0.698
Sfla_3961
Manually curated; PFAM: type III restriction protein res subunit; KEGG: sgr:SGR_4601 hypothetical protein; SMART: DEAD-like helicase.
   
    0.698
Sfla_4044
KEGG: sma:SAV_5202 ATP-dependent helicase; PFAM: Protein of unknown function DUF3427; type III restriction protein res subunit; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase.
   
    0.698
Your Current Organism:
Streptomyces pratensis
NCBI taxonomy Id: 591167
Other names: S. pratensis ATCC 33331, Streptomyces flavogriseus ATCC 33331, Streptomyces pratensis ATCC 33331
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