STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfla_6292KEGG: mno:Mnod_3486 general substrate transporter. (442 aa)    
Predicted Functional Partners:
Sfla_6291
PFAM: polysaccharide deacetylase; KEGG: ske:Sked_34360 predicted xylanase/chitin deacetylase.
       0.865
Sfla_6293
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ske:Sked_34370 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein.
       0.865
Sfla_6294
PFAM: peptidase dimerisation domain protein; Ketopantoate reductase ApbA/PanE domain protein; peptidase M20; KEGG: ami:Amir_3983 peptidase dimerization domain protein.
       0.865
Sfla_6290
KEGG: sro:Sros_8204 putative transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type.
       0.617
Sfla_0534
KEGG: ach:Achl_3358 major facilitator superfamily MFS_1.
  
     0.409
Your Current Organism:
Streptomyces pratensis
NCBI taxonomy Id: 591167
Other names: S. pratensis ATCC 33331, Streptomyces flavogriseus ATCC 33331, Streptomyces pratensis ATCC 33331
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