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mreD protein (Dialister invisus) - STRING interaction network
"mreD" - Rod shape-determining protein MreD in Dialister invisus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreDRod shape-determining protein MreD (163 aa)    
Predicted Functional Partners:
mreC
Cell shape protein MreC ; Involved in formation and maintenance of cell shape (305 aa)
              0.867
GCWU000321_00112
Cell shape determining protein, MreB/Mrl family (344 aa)
              0.867
mrdA
Penicillin-binding protein 2 (621 aa)
              0.866
GCWU000321_00116
CobQ/CobB/MinD/ParA nucleotide binding domain protein (284 aa)
              0.865
mrdB
Rod shape-determining protein RodA (345 aa)
              0.647
GCWU000321_00118
Radical SAM domain protein (631 aa)
              0.621
GCWU000321_00119
Radical SAM-linked protein (211 aa)
              0.533
GCWU000321_00120
S1 RNA binding domain protein (472 aa)
              0.478
GCWU000321_00121
Thioredoxin (111 aa)
              0.444
Your Current Organism:
Dialister invisus
NCBI taxonomy Id: 592028
Other names: D. invisus, D. invisus DSM 15470, Dialister invisus, Dialister invisus DSM 15470, Dialister invisus Downes et al. 2003, Dialister invisus str. DSM 15470, Dialister invisus strain DSM 15470
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