STRINGSTRING
xth protein (Dialister invisus) - STRING interaction network
"xth" - Exodeoxyribonuclease III in Dialister invisus
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xthExodeoxyribonuclease III (254 aa)    
Predicted Functional Partners:
nth
DNA-(apurinic or apyrimidinic site) lyase ; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination, leaving a 3’-terminal unsaturated sugar and a product with a terminal 5’-phosphate (219 aa)
 
  0.989
dnaN
DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (369 aa)
   
  0.934
mutY
A/G-specific adenine glycosylase (351 aa)
     
  0.916
polA
DNA polymerase (858 aa)
     
  0.914
GCWU000321_00860
8-oxoguanine DNA-glycosylase (Ogg) (271 aa)
   
  0.836
nfo
Endonuclease IV ; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5’-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin (283 aa)
   
  0.813
GCWU000321_01971
Putative alkyl hydroperoxide reductase F subunit (540 aa)
   
 
  0.763
GCWU000321_00291
Response regulator receiver domain protein (234 aa)
     
      0.732
GCWU000321_01504
D,D-heptose 1,7-bisphosphate phosphatase (176 aa)
   
 
  0.695
GCWU000321_00083
D,D-heptose 1,7-bisphosphate phosphatase (171 aa)
   
 
  0.695
Your Current Organism:
Dialister invisus
NCBI taxonomy Id: 592028
Other names: D. invisus, D. invisus DSM 15470, Dialister invisus, Dialister invisus DSM 15470, Dialister invisus Downes et al. 2003, Dialister invisus str. DSM 15470, Dialister invisus strain DSM 15470
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