STRINGSTRING
GCWU000321_00557 protein (Dialister invisus) - STRING interaction network
"GCWU000321_00557" - CRISPR-associated endonuclease Cas1 in Dialister invisus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCWU000321_00557CRISPR-associated endonuclease Cas1 ; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (321 aa)    
Predicted Functional Partners:
GCWU000321_00556
CRISPR-associated helicase Cas3 (1144 aa)
 
   
  0.987
csy3
CRISPR-associated protein, Csy3 family (359 aa)
 
        0.985
csy4
CRISPR-derived RNA endonuclease Csy4 (190 aa)
 
     
  0.982
GCWU000321_00555
Putative CRISPR-associated protein, Csy1 family (389 aa)
 
          0.980
csy2
CRISPR-associated protein, Csy2 family (295 aa)
 
          0.980
GCWU000321_00558
Uncharacterized protein (48 aa)
              0.494
cas2
CRISPR-associated endoribonuclease Cas2 ; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (103 aa)
   
   
  0.489
csm3
CRISPR-associated RAMP protein, Csm3 family (231 aa)
   
        0.445
csm4
CRISPR-associated RAMP protein, Csm4 family (328 aa)
   
        0.445
csm5
CRISPR-associated RAMP protein, Csm5 family (388 aa)
   
        0.445
Your Current Organism:
Dialister invisus
NCBI taxonomy Id: 592028
Other names: D. invisus, D. invisus DSM 15470, Dialister invisus, Dialister invisus DSM 15470, Dialister invisus Downes et al. 2003, Dialister invisus str. DSM 15470, Dialister invisus strain DSM 15470
Server load: low (9%) [HD]