STRINGSTRING
rnr protein (Dialister invisus) - STRING interaction network
"rnr" - Ribonuclease R in Dialister invisus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnrRibonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (679 aa)    
Predicted Functional Partners:
smpB
Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] (156 aa)
       
  0.985
GCWU000321_00761
RNA methyltransferase, TrmH family, group 3 (282 aa)
   
      0.830
GCWU000321_01093
Hydrolase, NUDIX family (155 aa)
   
  0.787
GCWU000321_00317
Hydrolase, NUDIX family (179 aa)
   
  0.787
GCWU000321_01251
Periplasmic binding protein (377 aa)
 
 
      0.785
GCWU000321_01842
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (622 aa)
 
   
  0.744
GCWU000321_01744
Periplasmic binding protein (342 aa)
     
      0.731
GCWU000321_01689
Periplasmic binding protein (374 aa)
     
      0.731
GCWU000321_01043
Periplasmic binding protein (334 aa)
     
      0.731
GCWU000321_00983
Periplasmic binding protein (364 aa)
     
      0.731
Your Current Organism:
Dialister invisus
NCBI taxonomy Id: 592028
Other names: D. invisus, D. invisus DSM 15470, Dialister invisus, Dialister invisus DSM 15470, Dialister invisus Downes et al. 2003, Dialister invisus str. DSM 15470, Dialister invisus strain DSM 15470
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