STRINGSTRING
cirA protein (Dialister invisus) - STRING interaction network
"cirA" - Colicin I receptor in Dialister invisus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cirAColicin I receptor (668 aa)    
Predicted Functional Partners:
GCWU000321_01809
TonB-dependent receptor plug domain protein (992 aa)
   
          0.741
GCWU000321_00984
Iron chelate uptake ABC transporter, FeCT family, permease protein (353 aa)
 
          0.739
GCWU000321_00985
ABC transporter, ATP-binding protein (264 aa)
              0.701
GCWU000321_00983
Periplasmic binding protein (364 aa)
              0.701
GCWU000321_01675
TonB-dependent receptor plug domain protein (789 aa)
   
          0.687
GCWU000321_00062
TonB family domain protein (263 aa)
   
          0.627
GCWU000321_00981
Methyltransferase, YaeB family (133 aa)
              0.622
GCWU000321_00395
Outer membrane efflux protein (502 aa)
   
          0.574
GCWU000321_00060
Transporter, MotA/TolQ/ExbB proton channel family protein (208 aa)
   
          0.561
GCWU000321_00391
Outer membrane protein, OMP85 family (655 aa)
   
          0.557
Your Current Organism:
Dialister invisus
NCBI taxonomy Id: 592028
Other names: D. invisus, D. invisus DSM 15470, Dialister invisus, Dialister invisus DSM 15470, Dialister invisus Downes et al. 2003, Dialister invisus str. DSM 15470, Dialister invisus strain DSM 15470
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