STRINGSTRING
greA protein (Dialister invisus) - STRING interaction network
"greA" - Transcript cleavage factor GreA in Dialister invisus
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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greATranscript cleavage factor GreA ; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreA releases sequences of 2 to 3 nucleotides (160 aa)    
Predicted Functional Partners:
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1326 aa)
     
 
  0.894
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (326 aa)
 
 
 
  0.868
GCWU000321_00989
Lysyl-tRNA synthetase (631 aa)
         
  0.847
rpoZ
Transcriptase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (66 aa)
 
 
  0.778
GCWU000321_00381
Phosphoribulokinase/uridine kinase family protein (549 aa)
   
 
  0.773
rpoB
Transcriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1263 aa)
     
 
  0.721
murI
Glutamate racemase ; Provides the (R)-glutamate required for cell wall biosynthesis (258 aa)
     
 
  0.667
GCWU000321_01971
Putative alkyl hydroperoxide reductase F subunit (540 aa)
         
  0.648
GCWU000321_01998
DNA-directed DNA polymerase (901 aa)
 
     
  0.627
GCWU000321_00991
Uncharacterized protein (59 aa)
              0.612
Your Current Organism:
Dialister invisus
NCBI taxonomy Id: 592028
Other names: D. invisus, D. invisus DSM 15470, Dialister invisus, Dialister invisus DSM 15470, Dialister invisus Downes et al. 2003, Dialister invisus str. DSM 15470, Dialister invisus strain DSM 15470
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