STRINGSTRING
GCWU000321_01546 protein (Dialister invisus) - STRING interaction network
"GCWU000321_01546" - Site-specific recombinase, phage integrase family in Dialister invisus
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCWU000321_01546Site-specific recombinase, phage integrase family (166 aa)    
Predicted Functional Partners:
GCWU000321_01888
Uncharacterized protein (98 aa)
          0.965
GCWU000321_00309
Site-specific recombinase, phage integrase family (375 aa)
   
          0.770
GCWU000321_01892
Uncharacterized protein (93 aa)
 
          0.725
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (799 aa)
   
   
  0.688
GCWU000321_01547
YcfA-like protein (58 aa)
              0.639
GCWU000321_01548
Toxin-antitoxin system, antitoxin component, HicB family (128 aa)
              0.575
GCWU000321_01549
Uncharacterized protein (79 aa)
              0.575
hisS
Histidyl-tRNA synthetase (423 aa)
     
      0.558
GCWU000321_01627
Uncharacterized protein (420 aa)
   
   
  0.539
GCWU000321_00644
RNA polymerase sigma factor SigA ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (394 aa)
     
      0.462
Your Current Organism:
Dialister invisus
NCBI taxonomy Id: 592028
Other names: D. invisus, D. invisus DSM 15470, Dialister invisus, Dialister invisus DSM 15470, Dialister invisus Downes et al. 2003, Dialister invisus str. DSM 15470, Dialister invisus strain DSM 15470
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