STRINGSTRING
hsdR protein (Dialister invisus) - STRING interaction network
"hsdR" - Type I site-specific deoxyribonuclease, HsdR family in Dialister invisus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsdRType I site-specific deoxyribonuclease, HsdR family (1002 aa)    
Predicted Functional Partners:
GCWU000321_01626
Putative type I restriction-modification system, M subunit (561 aa)
 
   
  0.995
GCWU000321_01627
Uncharacterized protein (420 aa)
 
   
  0.988
GCWU000321_01628
Uncharacterized protein (607 aa)
   
        0.822
GCWU000321_01631
Divergent AAA domain protein (388 aa)
              0.786
GCWU000321_01630
Uncharacterized protein (165 aa)
              0.706
GCWU000321_01629
Restriction endonuclease (255 aa)
              0.704
GCWU000321_01624
Uncharacterized protein (68 aa)
              0.684
GCWU000321_00644
RNA polymerase sigma factor SigA ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (394 aa)
       
 
  0.659
GCWU000321_00049
RNA polymerase sigma factor SigA ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (388 aa)
       
 
  0.659
GCWU000321_02015
Transporter, basic amino acid/polyamine antiporter (APA) family (463 aa)
     
      0.565
Your Current Organism:
Dialister invisus
NCBI taxonomy Id: 592028
Other names: D. invisus, D. invisus DSM 15470, Dialister invisus, Dialister invisus DSM 15470, Dialister invisus Downes et al. 2003, Dialister invisus str. DSM 15470, Dialister invisus strain DSM 15470
Server load: low (11%) [HD]