STRINGSTRING
GCWU000321_01890 protein (Dialister invisus) - STRING interaction network
"GCWU000321_01890" - DNA-binding helix-turn-helix protein in Dialister invisus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCWU000321_01890DNA-binding helix-turn-helix protein (262 aa)    
Predicted Functional Partners:
GCWU000321_01889
DNA-binding helix-turn-helix protein (73 aa)
              0.709
GCWU000321_01894
Virulence-associated protein E (715 aa)
 
          0.657
GCWU000321_01891
Uncharacterized protein (68 aa)
              0.627
GCWU000321_01893
Uncharacterized protein (102 aa)
              0.607
GCWU000321_01892
Uncharacterized protein (93 aa)
              0.607
GCWU000321_01888
Uncharacterized protein (98 aa)
              0.424
GCWU000321_01887
Site-specific recombinase, phage integrase family (274 aa)
              0.424
Your Current Organism:
Dialister invisus
NCBI taxonomy Id: 592028
Other names: D. invisus, D. invisus DSM 15470, Dialister invisus, Dialister invisus DSM 15470, Dialister invisus Downes et al. 2003, Dialister invisus str. DSM 15470, Dialister invisus strain DSM 15470
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