STRINGSTRING
GCWU000321_01949 protein (Dialister invisus) - STRING interaction network
"GCWU000321_01949" - Transporter in Dialister invisus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCWU000321_01949Transporter (451 aa)    
Predicted Functional Partners:
GCWU000321_01950
Transporter (452 aa)
 
       
0.695
GCWU000321_01948
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (305 aa)
              0.535
GCWU000321_01947
Uncharacterized protein (195 aa)
              0.486
GCWU000321_01951
Uncharacterized protein (415 aa)
              0.476
GCWU000321_01946
Uncharacterized protein (115 aa)
              0.458
GCWU000321_01945
Uncharacterized protein (216 aa)
              0.452
smpB
Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] (156 aa)
              0.424
Your Current Organism:
Dialister invisus
NCBI taxonomy Id: 592028
Other names: D. invisus, D. invisus DSM 15470, Dialister invisus, Dialister invisus DSM 15470, Dialister invisus Downes et al. 2003, Dialister invisus str. DSM 15470, Dialister invisus strain DSM 15470
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