STRINGSTRING
hypF protein (Dialister invisus) - STRING interaction network
"hypF" - Carbamoyltransferase HypF in Dialister invisus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hypFCarbamoyltransferase HypF (769 aa)    
Predicted Functional Partners:
hypE
Hydrogenase expression/formation protein HypE (327 aa)
 
 
 
  0.996
hypD
Hydrogenase expression/formation protein HypD (349 aa)
 
     
  0.980
hypB
Hydrogenase accessory protein HypB (214 aa)
 
     
  0.973
GCWU000321_01980
Putative hydrogenase nickel insertion protein HypA (127 aa)
 
     
  0.921
GCWU000321_01976
NADH ubiquinone oxidoreductase, 20 Kd subunit (156 aa)
   
   
  0.886
GCWU000321_01978
Respiratory-chain NADH dehydrogenase, 49 Kd subunit (361 aa)
   
   
  0.886
GCWU000321_01977
Uncharacterized protein (151 aa)
              0.871
GCWU000321_01975
NADH dehydrogenase (291 aa)
   
   
  0.869
GCWU000321_01983
HupF/HypC family protein (67 aa)
              0.859
GCWU000321_01974
NADH-ubiquinone/plastoquinone (Complex I) family protein (655 aa)
         
  0.853
Your Current Organism:
Dialister invisus
NCBI taxonomy Id: 592028
Other names: D. invisus, D. invisus DSM 15470, Dialister invisus, Dialister invisus DSM 15470, Dialister invisus Downes et al. 2003, Dialister invisus str. DSM 15470, Dialister invisus strain DSM 15470
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