STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU69822.1KEGG: pwa:Pecwa_2464 type VI secretion protein IcmF; TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215. (1208 aa)    
Predicted Functional Partners:
ADU69823.1
KEGG: pwa:Pecwa_2465 type IV / VI secretion system protein, DotU family; TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: Type IV / VI secretion system, DotU; OmpA/MotB domain protein.
 
 
 0.967
ADU69821.1
KEGG: pwa:Pecwa_2463 type VI secretion-associated protein, BMA_A0400 family; TIGRFAM: type VI secretion-associated protein, BMA_A0400 family; PFAM: Type VI secretion system-associated, BMAA0400.
 
  
 0.953
ADU69820.1
KEGG: pwa:Pecwa_2462 type VI secretion-associated protein, ImpA family; TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein.
 
  
 0.947
ADU69824.1
KEGG: pwa:Pecwa_2466 type VI secretion protein, VC_A0114 family; TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876.
 
  
 0.946
ADU69825.1
TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: pwa:Pecwa_2467 type VI secretion lipoprotein, VC_A0113 family.
 
  
 0.940
ADU69818.1
KEGG: pwa:Pecwa_2460 type VI secretion protein, EvpB/VC_A0108 family; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877.
 
  
 0.926
ADU69633.1
KEGG: eta:ETA_18630 OmpA family protein; TIGRFAM: type IV / VI secretion system protein, DotU family; PFAM: Type IV / VI secretion system, DotU; OmpA/MotB domain protein.
 
 
 0.918
ADU69819.1
KEGG: pwa:Pecwa_2461 type VI secretion protein, VC_A0107 family; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein.
 
  
 0.913
ADU70749.1
PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: spe:Spro_1798 ImcF domain-containing protein.
  
  
 
0.908
ADU69634.1
KEGG: eta:ETA_18640 hypothetical protein; TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein.
  
  
 
0.903
Your Current Organism:
Pantoea sp. At9b
NCBI taxonomy Id: 592316
Other names: P. sp. At-9b, Pantoea sp. At-9b
Server load: high (82%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.