STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amyA-1Alpha-amylase (amyA); 1 probable transmembrane helix predicted by modhmm. (476 aa)    
Predicted Functional Partners:
TGAM_0599
Maltogenic alpha-amylase.
  
  
 0.950
pulhA
Pullulan hydrolase type III (pulhA); 1 probable transmembrane helix predicted by modhmm.
  
  
 0.940
amyA-2
Alpha-amylase (amyA).
     
 0.916
glgP
Alpha-glucan phosphorylase (glgP).
  
  
  0.915
TGAM_1711
Glycosyl hydrolase family 57, possibly alpha-amylase; Belongs to the glycosyl hydrolase 57 family.
     
  0.900
TGAM_0221
Transcription regulator, arsR family.
       0.534
TGAM_0220
Conserved archaeal hypothetical protein; Contains DUF211 domain.
       0.508
TGAM_0219
Transcription regulator, arsR family.
       0.499
TGAM_0223
Hypothetical protein; 9 probable transmembrane helices predicted by modhmm.
       0.459
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.