STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmYConserved hypothetical protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family. (202 aa)    
Predicted Functional Partners:
pus10
RNA-binding protein, pseudouridine synthase family; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.
 
   
 0.674
TGAM_1666
Conserved hypothetical protein; Belongs to the UPF0235 family.
       0.620
TGAM_0514
Zinc-finger protein, translation initiation factor 2 beta related protein; UCP015877 member.
  
     0.587
TGAM_1316
Transcription regulator, putative; Contains 1 Helix-turn-helix motif.
  
     0.587
flaI
Flagella-related protein I, type II/IV secretion system protein E (flaI).
  
    0.555
TGAM_1383
Radical SAM protein, predicted Fe-S oxidoreductase.
  
     0.542
cheA
Chemotaxis histidine kinase (cheA).
  
    0.531
TGAM_0104
Conserved archaeal hypothetical protein.
  
   
 0.518
TGAM_1333
Radical SAM protein, elongator protein 3/MiaB/NifB related.
  
     0.518
TGAM_1344
Conserved hypothetical protein; Belongs to DUF555 family; Belongs to the UPF0212 family.
  
     0.505
Your Current Organism:
Thermococcus gammatolerans
NCBI taxonomy Id: 593117
Other names: T. gammatolerans EJ3, Thermococcus gammatolerans EJ3, Thermococcus gammatolerans str. EJ3, Thermococcus gammatolerans strain EJ3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.