STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mutXMutator mutT protein; Identified by similarity to SP:P41354; match to protein family HMM PF00293. (161 aa)    
Predicted Functional Partners:
FSU_1594
Putative isopentenyl-diphosphate delta-isomerase; Identified by match to protein family HMM PF00293.
 
    
 0.838
FSU_1032
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
 
    0.735
FSU_1931
Alcohol dehydrogenase, iron-dependent; Identified by match to protein family HMM PF00465.
 
 
    0.690
FSU_1511
Identified by match to protein family HMM PF00899.
      0.661
FSU_0789
ATPase domain protein.
       0.537
FSU_0018
Hypothetical protein; Identified by glimmer; putative.
  
     0.478
FSU_0788
Putative anti-anti-sigma factor; Identified by similarity to SP:P17903; match to protein family HMM PF01740; Belongs to the anti-sigma-factor antagonist family.
       0.461
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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