STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_1628Putative nitrogen regulatory protein P-II; Identified by similarity to SP:Q52905. (111 aa)    
Predicted Functional Partners:
amt
Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.
  
 0.991
argA
Amino-acid N-acetyltransferase; Identified by similarity to SP:P08205; match to protein family HMM PF00583; match to protein family HMM PF00696; match to protein family HMM TIGR01890; Belongs to the acetyltransferase family.
   
 
 0.827
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 
 0.820
FSU_1630
Putative membrane protein; Identified by match to protein family HMM PF07556.
 
     0.782
FSU_0019
Identified by match to protein family HMM PF03747.
   
 
 0.726
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
  
  
 0.635
FSU_1542
Putative ABC transporter, periplasmic substrate-binding protein; Identified by similarity to GB:AAM01816.1; match to protein family HMM PF04069.
    
 
 0.491
FSU_1551
Conserved hypothetical protein; Identified by similarity to GB:AAO15990.1.
    
 
 0.491
FSU_1552
Conserved hypothetical protein; Identified by similarity to GB:AAO15990.1.
    
 
 0.491
FSU_2295
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
   
 0.447
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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