STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_0084TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; NADPH-dependent FMN reductase; KEGG: ypm:YP_1536 TrpR binding protein WrbA. (199 aa)    
Predicted Functional Partners:
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
Tola_2428
KEGG: bxe:Bxe_A1200 hypothetical protein.
   
  
 0.645
Tola_0154
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: asa:ASA_4139 LysM domain-containing protein.
   
  
 0.540
Tola_0325
PFAM: Ferritin Dps family protein; KEGG: bba:Bd1236 DNA-binding stress protein; Belongs to the Dps family.
  
  
 0.535
Tola_0773
PFAM: Ferritin Dps family protein; KEGG: bba:Bd1236 DNA-binding stress protein; Belongs to the Dps family.
  
  
 0.535
Tola_0085
TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: hch:HCH_05445 phage shock protein PspC.
       0.476
Tola_1050
PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: aha:AHA_2440 PrkA serine kinase.
   
    0.476
Tola_0086
TIGRFAM: phage shock protein B; PFAM: shock B family protein; KEGG: hch:HCH_05444 phage shock protein B.
       0.453
Tola_0087
TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: hch:HCH_05443 phage shock protein A (IM30), suppresses sigma54-dependent transcription.
       0.453
Tola_0424
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: aha:AHA_3898 secreted protein.
  
  
 0.430
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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