STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_2465PFAM: secretion protein HlyD family protein; KEGG: pla:Plav_3445 secretion protein HlyD family protein. (359 aa)    
Predicted Functional Partners:
Tola_2467
PFAM: ABC-2 type transporter; KEGG: pla:Plav_3447 ABC-2 type transporter.
 
  
 0.961
Tola_2466
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: pla:Plav_3446 ABC transporter related.
 
  
 0.959
Tola_2464
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pla:Plav_3444 RND efflux system outer membrane lipoprotein.
 
 
 0.907
Tola_0592
PFAM: ABC-2 type transporter; KEGG: dar:Daro_0988 hypothetical protein.
 
  
 0.836
Tola_0593
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: dar:Daro_0987 ABC-2:ABC transporter related.
 
  
 0.826
macB
ABC transporter related; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.709
Tola_2468
KEGG: pla:Plav_3448 hypothetical protein.
       0.632
Tola_2469
TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: pla:Plav_3449 acetoacetyl-CoA reductase.
       0.620
Tola_2470
KEGG: pla:Plav_3450 hypothetical protein.
 
     0.610
Tola_1259
Type I secretion system ATPase; KEGG: asa:ASA_1669 toxin secretion ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
  
 
 0.607
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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