STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_008157Lymphoid specific helicase variant4. (835 aa)    
Predicted Functional Partners:
CAOG_003678
Retinoblastoma binding protein 7.
   
 0.848
CAOG_002511
Exodeoxyribonuclease 1.
   
 0.836
CAOG_002972
Fanconi anemia.
   
 0.828
CAOG_000754
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.822
CAOG_005964
Uncharacterized protein.
    
 0.817
CAOG_000246
Uncharacterized protein.
    
 0.817
CAOG_001818
Histone H2B; Belongs to the histone H2B family.
   
 0.815
CAOG_001097
Uncharacterized protein.
   
 0.778
CAOG_004778
Histone macroH2A1.1; Belongs to the histone H2A family.
   
 0.768
CAOG_000768
Histone H2A; Belongs to the histone H2A family.
   
 0.762
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.