STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_006154RRM domain-containing protein. (928 aa)    
Predicted Functional Partners:
CAOG_003309
Uncharacterized protein.
    
 0.773
CAOG_007112
MIF4G domain-containing protein.
    
 0.764
CAOG_003590
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.753
CAOG_002777
Uncharacterized protein.
    
 0.750
CAOG_000338
RRM domain-containing protein.
    
 0.750
CAOG_006930
Nuclear cap binding protein subunit 2.
    
 0.748
CAOG_007948
Uncharacterized protein.
    
 0.748
CAOG_008022
Small nuclear ribonucleoprotein Sm D3.
    
 0.740
CAOG_007919
Sm domain-containing protein.
    
 0.738
CAOG_004211
Splicing factor 3b.
    
 0.731
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.