STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU34786.1KEGG: vap:Vapar_0528 type VI secretion protein, VC_A0111 family; TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305. (360 aa)    
Predicted Functional Partners:
ADU34784.1
KEGG: vap:Vapar_0526 type VI secretion system lysozyme-related protein; TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein.
 
  
 0.964
ADU34785.1
KEGG: vap:Vapar_0527 type VI secretion protein, VC_A0110 family; TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879.
 
  
 0.960
ADU34783.1
PFAM: virulence protein SciE type; KEGG: vap:Vapar_0525 virulence protein SciE type.
 
    0.955
ADU34788.1
TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: vap:Vapar_0530 type VI secretion ATPase, ClpV1 family; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.
 
  
 0.917
ADU34789.1
TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; KEGG: vap:Vapar_0531 type VI secretion system Vgr family protein.
 
  
 0.917
ADU34808.1
KEGG: vap:Vapar_0551 type VI secretion-associated protein, ImpA family; TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein.
 
  
 0.889
ADU37089.1
KEGG: vap:Vapar_0192 type VI secretion-associated protein, ImpA family; TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein.
 
  
 0.889
ADU34794.1
KEGG: vap:Vapar_0536 type VI secretion system Vgr family protein; TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Gp5 domain protein.
 
  
 0.884
ADU39430.1
KEGG: bpl:BURPS1106A_A0237 hypothetical protein; TIGRFAM: type IV / VI secretion system protein, DotU family; PFAM: Type IV / VI secretion system, DotU.
 
  
 0.877
ADU34773.1
KEGG: vap:Vapar_0515 type IV / VI secretion system protein, DotU family; TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: Type IV / VI secretion system, DotU; OmpA/MotB domain protein.
 
  
 0.874
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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