STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU34807.1KEGG: vap:Vapar_0550 type VI secretion protein, VC_A0107 family; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: Uncharacterised conserved protein UCP028301. (171 aa)    
Predicted Functional Partners:
ADU34806.1
KEGG: vap:Vapar_0549 type VI secretion protein, EvpB/VC_A0108 family; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877.
 
 0.975
ADU34808.1
KEGG: vap:Vapar_0551 type VI secretion-associated protein, ImpA family; TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein.
 
  
 0.948
ADU34805.1
PFAM: protein of unknown function DUF796; KEGG: vap:Vapar_0548 protein of unknown function DUF796.
 
 
 0.943
ADU37460.1
KEGG: bte:BTH_II0122 hypothetical protein; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877.
 
 0.941
ADU37091.1
KEGG: vap:Vapar_0194 type VI secretion protein, EvpB/VC_A0108 family; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877.
 
 0.940
ADU39688.1
KEGG: cti:RALTA_B1014 hypothetical protein; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877.
 
 0.939
ADU39430.1
KEGG: bpl:BURPS1106A_A0237 hypothetical protein; TIGRFAM: type IV / VI secretion system protein, DotU family; PFAM: Type IV / VI secretion system, DotU.
 
  
 0.931
ADU34783.1
PFAM: virulence protein SciE type; KEGG: vap:Vapar_0525 virulence protein SciE type.
 
   0.923
ADU37093.1
PFAM: virulence protein SciE type; KEGG: vap:Vapar_0196 virulence protein SciE type.
 
   0.922
ADU34773.1
KEGG: vap:Vapar_0515 type IV / VI secretion system protein, DotU family; TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: Type IV / VI secretion system, DotU; OmpA/MotB domain protein.
 
  
 0.914
Your Current Organism:
Variovorax paradoxus EPS
NCBI taxonomy Id: 595537
Other names: V. paradoxus EPS, Variovorax paradoxus str. EPS, Variovorax paradoxus strain EPS
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