node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplD | rpsB | Varpa_5591 | Varpa_3327 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein S2; KEGG: vap:Vapar_2599 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.996 |
rplD | rpsC | Varpa_5591 | Varpa_5586 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplD | rpsG | Varpa_5591 | Varpa_5598 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.997 |
rplD | rpsH | Varpa_5591 | Varpa_5768 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.997 |
rplD | rpsI | Varpa_5591 | Varpa_5305 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | PFAM: ribosomal protein S9; KEGG: vap:Vapar_4677 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.981 |
rplD | rpsM | Varpa_5591 | Varpa_5760 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.995 |
rplD | rpsO | Varpa_5591 | Varpa_4030 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.994 |
rplD | rpsP | Varpa_5591 | Varpa_1629 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | KEGG: vap:Vapar_1473 ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.977 |
rplD | rpsQ | Varpa_5591 | Varpa_5583 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |
rplD | rpsS | Varpa_5591 | Varpa_5588 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
rpsB | rplD | Varpa_3327 | Varpa_5591 | Ribosomal protein S2; KEGG: vap:Vapar_2599 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.996 |
rpsB | rpsC | Varpa_3327 | Varpa_5586 | Ribosomal protein S2; KEGG: vap:Vapar_2599 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.996 |
rpsB | rpsG | Varpa_3327 | Varpa_5598 | Ribosomal protein S2; KEGG: vap:Vapar_2599 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.997 |
rpsB | rpsH | Varpa_3327 | Varpa_5768 | Ribosomal protein S2; KEGG: vap:Vapar_2599 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.996 |
rpsB | rpsI | Varpa_3327 | Varpa_5305 | Ribosomal protein S2; KEGG: vap:Vapar_2599 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | PFAM: ribosomal protein S9; KEGG: vap:Vapar_4677 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.996 |
rpsB | rpsM | Varpa_3327 | Varpa_5760 | Ribosomal protein S2; KEGG: vap:Vapar_2599 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.997 |
rpsB | rpsO | Varpa_3327 | Varpa_4030 | Ribosomal protein S2; KEGG: vap:Vapar_2599 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.995 |
rpsB | rpsP | Varpa_3327 | Varpa_1629 | Ribosomal protein S2; KEGG: vap:Vapar_2599 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | KEGG: vap:Vapar_1473 ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.995 |
rpsB | rpsQ | Varpa_3327 | Varpa_5583 | Ribosomal protein S2; KEGG: vap:Vapar_2599 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.996 |
rpsB | rpsS | Varpa_3327 | Varpa_5588 | Ribosomal protein S2; KEGG: vap:Vapar_2599 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.995 |