STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84371.1Helix-turn-helix domain protein; KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3. (92 aa)    
Predicted Functional Partners:
AEB84372.1
KEGG: nde:NIDE0076 hypothetical protein.
  
  
 0.809
AEB84376.1
KEGG: mms:mma_2689 hypothetical protein.
 
     0.772
AEB84379.1
Domain of unknown function P63C-containing protein; PFAM: Uncharacterised protein domain P63C; KEGG: nde:NIDE0083 hypothetical protein.
 
     0.753
AEB84377.1
KEGG: nde:NIDE0081 hypothetical protein.
 
     0.741
AEB84381.1
KEGG: dia:Dtpsy_3223 hypothetical protein.
 
     0.736
AEB84378.1
KEGG: dia:Dtpsy_3225 hypothetical protein.
 
     0.729
AEB84384.1
KEGG: dia:Dtpsy_3220 hypothetical protein.
 
   
 0.718
AEB84375.1
KEGG: mca:MCA2640 hypothetical protein.
 
  
 0.696
AEB84383.1
TIGRFAM: DNA primase, phage/plasmid; PFAM: Phage/plasmid primase, P4, C-terminal; KEGG: dia:Dtpsy_3221 hypothetical protein; SMART: Phage/plasmid primase, P4, C-terminal.
 
   
 0.684
AEB84391.1
KEGG: dia:Dtpsy_3211 hypothetical protein.
  
 
 
 0.682
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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