STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84372.1KEGG: nde:NIDE0076 hypothetical protein. (270 aa)    
Predicted Functional Partners:
AEB84371.1
Helix-turn-helix domain protein; KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
  
 0.807
AEB84373.1
KEGG: nde:NIDE0077 hypothetical protein.
       0.544
AEB84374.1
KEGG: nde:NIDE0078 hypothetical protein.
       0.527
AEB84368.1
Resolvase domain protein; KEGG: nde:NIDE0070 putative site-specific recombinase, resolvase family (phage related); PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal.
       0.521
AEB84369.1
KEGG: mfa:Mfla_1156 hypothetical protein.
       0.521
AEB84370.1
KEGG: mfa:Mfla_1157 hypothetical protein.
       0.520
AEB84366.1
KEGG: rsl:RPSI07_0201 putative bacteriophage-related protein.
       0.506
AEB84367.1
KEGG: rsl:RPSI07_0202 putative bacteriophage-related protein.
       0.506
AEB84379.1
Domain of unknown function P63C-containing protein; PFAM: Uncharacterised protein domain P63C; KEGG: nde:NIDE0083 hypothetical protein.
  
  
 0.456
AEB84375.1
KEGG: mca:MCA2640 hypothetical protein.
  
    0.403
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.