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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85058.1PFAM: Blue (type 1) copper domain; KEGG: ajs:Ajs_2668 blue (type1) copper domain-containing protein. (163 aa)    
Predicted Functional Partners:
AEB85059.1
PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: ajs:Ajs_2669 multicopper oxidase, type 3.
 
  
 0.954
AEB85060.1
PFAM: Outer membrane efflux protein; KEGG: ajs:Ajs_2670 putative copper resistance-related lipoprotein.
 
     0.918
AEB85057.1
PFAM: Copper binding periplasmic protein CusF; KEGG: ajs:Ajs_2667 hypothetical protein.
 
     0.896
AEB85105.1
KEGG: ajs:Ajs_1463 hypothetical protein.
 
     0.772
AEB84561.1
KEGG: ajs:Ajs_2667 hypothetical protein.
 
     0.768
AEB85061.1
KEGG: ajs:Ajs_2671 hypothetical protein.
       0.655
AEB84559.1
KEGG: bmj:BMULJ_00902 copper resistance protein B; manually curated; PFAM: Copper resistance B precursor.
  
  
 0.637
AEB84553.1
Bilirubin oxidase; KEGG: net:Neut_0014 twin-arginine translocation pathway signal; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2.
 
  
 0.546
AEB84558.1
Copper-resistance protein, CopA family; KEGG: bmj:BMULJ_00903 copper resistance transmembrane protein; TIGRFAM: Copper-resistance protein CopA; Twin-arginine translocation pathway, signal sequence; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Multicopper oxidase, type 2.
 
  
 0.538
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.505
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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