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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85096.1KEGG: dia:Dtpsy_2188 hypothetical protein. (51 aa)    
Predicted Functional Partners:
AEB85095.1
KEGG: ajs:Ajs_1479 membrane protein-like protein.
       0.773
AEB85092.1
TIGRFAM: Secretion protein HlyD; KEGG: ajs:Ajs_1482 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.601
AEB85093.1
PFAM: Outer membrane efflux protein; KEGG: ajs:Ajs_1481 outer membrane efflux protein.
       0.601
AEB85094.1
PFAM: Protein of unknown function DUF2789; KEGG: ajs:Ajs_1480 hypothetical protein.
       0.601
AEB85091.1
KEGG: ajs:Ajs_2703 CzcA family heavy metal efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.577
AEB85090.1
KEGG: ajs:Ajs_2702 hypothetical protein.
       0.408
AEB85097.1
TIGRFAM: YVTN beta-propeller repeat; KEGG: ajs:Ajs_1471 YVTN beta-propeller repeat-containing protein.
       0.404
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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