STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85283.1KEGG: pzu:PHZ_c2128 hypothetical protein. (200 aa)    
Predicted Functional Partners:
AEB85282.1
PFAM: Protein of unknown function DUF3423.
       0.810
AEB83784.1
KEGG: vei:Veis_2284 hypothetical protein.
 
 
 
 0.558
AEB83291.1
Helix-turn-helix domain protein; KEGG: tbd:Tbd_1344 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
   
 
 0.436
AEB83835.1
Hypothetical protein; KEGG: shn:Shewana3_1258 XRE family transcriptional regulator.
   
 
 0.436
AEB83987.1
Helix-turn-helix domain protein; KEGG: rme:Rmet_1249 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
   
 
 0.436
AEB84371.1
Helix-turn-helix domain protein; KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
   
 
 0.436
AEB84379.1
Domain of unknown function P63C-containing protein; PFAM: Uncharacterised protein domain P63C; KEGG: nde:NIDE0083 hypothetical protein.
   
 
 0.436
AEB84447.1
Helix-turn-helix domain protein; KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
   
 
 0.436
AEB84477.1
KEGG: ajs:Ajs_1637 XRE family transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Helix-turn-helix type 3; Protein of unknown function DUF955; SMART: Helix-turn-helix type 3.
   
 
 0.436
AEB84541.1
KEGG: bpr:GBP346_A0950 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
   
 
 0.436
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.