STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85634.1PRTRC system protein E; TIGRFAM: ParB-related, ThiF-related cassette, protein E; KEGG: ajs:Ajs_1592 hypothetical protein. (160 aa)    
Predicted Functional Partners:
AEB85633.1
TIGRFAM: ParB-related, ThiF-related cassette, protein C; KEGG: ajs:Ajs_1593 hypothetical protein.
       0.553
AEB85632.1
PRTRC system protein F; TIGRFAM: ParB-related, ThiF-related cassette, protein F; KEGG: ajs:Ajs_1594 hypothetical protein.
       0.541
AEB85635.1
PRTRC system ParB family protein; TIGRFAM: ParB-related, ThiF-related cassette, ParB; ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ajs:Ajs_1591 ParB family protein; SMART: ParB-like nuclease; Belongs to the ParB family.
       0.531
AEB85631.1
PRTRC system protein B; TIGRFAM: ParB-related, ThiF-related cassette, protein B; KEGG: ajs:Ajs_1595 hypothetical protein.
       0.495
AEB85630.1
KEGG: ajs:Ajs_1596 hypothetical protein; TIGRFAM: ParB-related, ThiF-related cassette, protein A; PFAM: Domain of unknown function DUF2016.
       0.491
AEB85629.1
PRTRC system ThiF family protein; KEGG: ajs:Ajs_1597 UBA/ThiF-type NAD/FAD binding protein; TIGRFAM: ParB-related, ThiF-related cassette, ThiF; PFAM: UBA/THIF-type NAD/FAD binding fold.
       0.416
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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