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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86818.1PFAM: Amidohydrolase 2; KEGG: pol:Bpro_2147 amidohydrolase 2. (296 aa)    
Predicted Functional Partners:
AEB82938.1
PFAM: Amidohydrolase 2; KEGG: aav:Aave_4267 amidohydrolase 2.
  
  
 
0.920
AEB82458.1
PFAM: Acylphosphatase-like; KEGG: ajs:Ajs_4152 acylphosphatase.
     
  0.800
AEB82472.1
PFAM: Crotonase, core; KEGG: rme:Rmet_0841 enoyl-CoA hydratase.
     
  0.800
AEB83612.1
PFAM: Amidase; KEGG: dac:Daci_2827 amidase.
     
  0.800
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
     
  0.800
AEB83932.1
PFAM: Crotonase, core; KEGG: bbr:BB0629 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
  0.800
AEB84064.1
PFAM: Crotonase, core; KEGG: rpi:Rpic_2628 enoyl-CoA hydratase/isomerase.
     
  0.800
AEB86819.1
KEGG: pol:Bpro_2146 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
 
  
 0.728
AEB86599.1
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: dac:Daci_4431 6-phosphogluconate dehydrogenase NAD-binding.
 
     0.618
AEB86817.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2148 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.609
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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