STRINGSTRING
fgenesh1_pg.C_scaffold_1000684 protein (Arabidopsis lyrata) - STRING interaction network
"fgenesh1_pg.C_scaffold_1000684" - Zinc finger protein in Arabidopsis lyrata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fgenesh1_pg.C_scaffold_1000684Zinc finger protein (330 aa)    
Predicted Functional Partners:
fgenesh2_kg.3__3166__AT2G20050.1
Uncharacterized protein (1093 aa)
     
 
  0.892
fgenesh2_kg.4__740__AT2G28290.1
Uncharacterized protein (3451 aa)
       
 
  0.589
scaffold_302478.1
Fie (369 aa)
       
 
  0.565
Al_scaffold_0001_4512
Predicted protein (354 aa)
       
 
  0.565
fgenesh2_kg.3__2167__AT3G19510.1
Uncharacterized protein (724 aa)
       
 
  0.515
fgenesh2_kg.2__1149__AT1G68910.1
Uncharacterized protein (630 aa)
       
      0.513
scaffold_502292.1
Myb family transcription factor (1655 aa)
       
 
  0.505
scaffold_801259.1
Uncharacterized protein; Belongs to the peptidase C19 family (758 aa)
       
 
  0.432
scaffold_604085.1
Histone-lysine N-methyltransferase; Swinger (846 aa)
       
 
  0.401
scaffold_100418.1
Uncharacterized protein (192 aa)
       
 
  0.401
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 59689
Other names: A. lyrata, Arabidopsis lyrata, lyrate rockcress
Server load: low (9%) [HD]