STRINGSTRING
fgenesh1_pg.C_scaffold_8000271 protein (Arabidopsis lyrata) - STRING interaction network
"fgenesh1_pg.C_scaffold_8000271" - Beta-amylase in Arabidopsis lyrata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fgenesh1_pg.C_scaffold_8000271Beta-amylase (682 aa)    
Predicted Functional Partners:
scaffold_302856.1
Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family (988 aa)
           
  0.730
fgenesh1_pm.C_scaffold_2001567
Alpha-amylase; Belongs to the glycosyl hydrolase 13 family (413 aa)
           
  0.683
fgenesh2_kg.7__1771__AT4G25000.1
Alpha-amylase; Belongs to the glycosyl hydrolase 13 family (423 aa)
           
  0.674
Al_scaffold_0962_2
Beta-amylase (108 aa)
           
  0.673
fgenesh2_kg.1__2052__AT1G18730.3
Uncharacterized protein (175 aa)
     
   
  0.596
fgenesh1_pg.C_scaffold_2001317
Uncharacterized protein (882 aa)
           
  0.596
scaffold_601196.1
Alpha-glucosidase 1 ; Belongs to the glycosyl hydrolase 31 family (905 aa)
           
  0.567
scaffold_202680.1
Uncharacterized protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family (511 aa)
           
  0.567
scaffold_101162.1
Uncharacterized protein (1396 aa)
           
  0.566
fgenesh2_kg.1__262__AT1G03310.2
ATISA2/BE2/DBE1/ISA2 (872 aa)
           
  0.564
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 59689
Other names: A. lyrata, Arabidopsis lyrata, lyrate rockcress
Server load: low (9%) [HD]