STRINGSTRING
fgenesh2_kg.7__195__AT4G39780.1 protein (Arabidopsis lyrata) - STRING interaction network
"fgenesh2_kg.7__195__AT4G39780.1" - Uncharacterized protein in Arabidopsis lyrata
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fgenesh2_kg.7__195__AT4G39780.1Uncharacterized protein (277 aa)    
Predicted Functional Partners:
fgenesh1_pm.C_scaffold_7000162
Uncharacterized protein; Belongs to the multicopper oxidase family (581 aa)
           
  0.677
fgenesh2_kg.7__203__AT4G39850.1
Peroxisomal abc transporter (1337 aa)
           
  0.676
fgenesh2_kg.7__52__AT4G38540.1
Uncharacterized protein (404 aa)
           
  0.673
fgenesh2_kg.7__291__AT4G37610.1
Uncharacterized protein (369 aa)
       
 
  0.600
fgenesh2_kg.1__1998__AT1G18270.2
Ketose-bisphosphate aldolase class-II family protein (1376 aa)
           
  0.565
fgenesh2_kg.7__288__AT4G37640.1
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium (1014 aa)
           
  0.476
Al_scaffold_0004_245
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium (1015 aa)
           
  0.476
fgenesh2_kg.3__3329__AT2G17440.1
Leucine-rich repeat family protein (532 aa)
           
  0.463
Al_scaffold_0007_509
Predicted protein (550 aa)
           
  0.463
fgenesh2_kg.8__2309__AT5G63110.1
Histone deacetylase ; Belongs to the histone deacetylase family. HD Type 1 subfamily (471 aa)
           
  0.443
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 59689
Other names: A. lyrata, Arabidopsis lyrata, lyrate rockcress
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