STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB5CPutative RAB5C member RAS oncogene family variant 3. (216 aa)    
Predicted Functional Partners:
RABGEF1
Uncharacterized protein.
   
 0.960
EEA1
Early endosome antigen 1.
    
 0.932
RAB5B
Ras-related protein Rab-5B.
  
  
0.902
RAB5A
Ras-related protein Rab-5A.
  
  
 
0.901
RBSN
Rabenosyn, RAB effector.
   
 0.876
APPL2
Uncharacterized protein.
   
 
 0.853
APPL1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
 
 0.852
GDI2
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.840
RABEP1
Uncharacterized protein.
    
 0.811
GAPVD1
GTPase activating protein and VPS9 domains 1.
    
 0.765
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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